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| Category | A |
|---|---|
| Domain name | astrobiomike.github.io |
| IP | 185.199.109.153 |
| Country by IP | NL |
| Web server type | Varnish |
| Alexa traffic rank | 887328 |
Welcome! This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if youre not sure, then the place to start is definitely Unix ?. Unix (command line) R. Amplicon analysis. Genomics. Visit website
GitHub - AstrobioMike/AstrobioMike.github.io: Site to help biologists wade their way into bioinformatics. AstrobioMike / AstrobioMike.github.io Public master 2 branches 5 tags Go to file Code AstrobioMike adding note about ~/.profile to PATH page 1455690 on Nov 17 774 commits .github/ ISSUE_TEMPLATE Update issue templates 3 years ago R Visit website
Mike Lee AstrobioMike Follow Micro-ecologist/bioinformatician exploring microbes everywhere from the deep biosphere to the space station astrobiomike.github.io <- bioinf for beginners 142 followers · 16 following NASA Ames Research Center Mountain View, CA microbialomics.org @Astrobiomike Beta Block or Report Pinned GToTree Public Visit website
AstrobioMike / AstrobioMike.github.io Public. Notifications Fork 16; Star 26. Code; Issues 3; Pull requests 0; Actions; Projects 0; Wiki; Security; Insights; New issue Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. ... Visit website
Site to help biologists wade their way into bioinformatics. - AstrobioMike.github.io/installing_packages.md at master · AstrobioMike/AstrobioMike.github.io Visit website
Site to help biologists wade their way into bioinformatics. - AstrobioMike.github.io/paper.md at master · AstrobioMike/AstrobioMike.github.io Visit website
Site to help biologists wade their way into bioinformatics. - Projects · AstrobioMike/AstrobioMike.github.io Visit website
Site to help biologists wade their way into bioinformatics. - AstrobioMike.github.io/_config.yml at master · AstrobioMike/AstrobioMike.github.io Visit website
The code for bioinformatic analyses can be accessed from GitHub [ 26 ]. We used the Chao1 index, a non-parametric richness index that calculates the minimal number of taxa present in a sample, and the Shannon index, which estimates the taxa diversity in a sample taking into account both abundance and evenness [ 27 ]. Visit website
An overview of the KOMB pipeline is given in Fig. 2. The main steps are as follows. First a DBG is constructed from reads in the sample and unitigs are identified from this graph. The reads can be subject to an optional k-mer filter as a preprocessing step. Visit website